BioC++

solving daily bioinformatic tasks
with C++ efficiently

René Rahn
Max Planck Institute for Molecular Genetics

Marcel Ehrhardt
Free University Berlin, de.NBI

Svenja Mehringer
Free University Berlin, ELIXIR

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

Schedule*:

  • 09:00 - 09:30 Setup
  • 09:30 - 10:00 Introduction Talk
  • 10:00 - 10:30 FASTQ -> FASTA Conversion (sequence files)
  • 10:30 - 10:45 Coffee Break
  • 10:45 - 12:30 Simple Quality Filter (range / lambda / tuple)
  • 12:30 - 13:00 "Short Break"
  • 13:30 - 14:30 Extended Quality Filter (view)
  • 14:30 - 14:45 Coffee Break
  • 14:45 - 15:45 Concepts (concept)
  • 15:45 - 16:15 Evaluation & Wrap-Up

@SeqAnLib

github/seqan

seqan.de